reports:3e55c13
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reports:3e55c13 [2016/08/06 13:16] karandesai96 created |
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| - | Test executed on commit [[https://www.github.com/tardis-sn/tardis/commit/3e55c131b553494db736bf6a97f427565a547ca2|3e55c131b553494db736bf6a97f427565a547ca2]] | ||
| - | <html> | ||
| - | <head> | ||
| - | <meta charset="utf-8"/> | ||
| - | <title>Test Report</title> | ||
| - | <style>body { | ||
| - | font-family: Helvetica, Arial, sans-serif; | ||
| - | font-size: 12px; | ||
| - | min-width: 1200px; | ||
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| - | * SUMMARY INFORMATION | ||
| - | ******************************/ | ||
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| - | background-color: #f6f6f6; | ||
| - | } | ||
| - | |||
| - | /****************************** | ||
| - | * TEST RESULT COLORS | ||
| - | ******************************/ | ||
| - | span.passed, .passed .col-result { | ||
| - | color: green; | ||
| - | } | ||
| - | span.skipped, span.xfailed, .skipped .col-result, .xfailed .col-result { | ||
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| - | /****************************** | ||
| - | * RESULTS TABLE | ||
| - | * | ||
| - | * 1. Table Layout | ||
| - | * 2. Extra | ||
| - | * 3. Sorting items | ||
| - | * | ||
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| - | #results-table th { | ||
| - | font-weight: bold | ||
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| - | |||
| - | /*------------------ | ||
| - | * 2. Extra | ||
| - | *------------------*/ | ||
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| - | height: 240px; | ||
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| - | overflow: hidden; | ||
| - | width: 320px | ||
| - | } | ||
| - | div.image img { | ||
| - | width: 320px | ||
| - | } | ||
| - | |||
| - | /*------------------ | ||
| - | * 3. Sorting items | ||
| - | *------------------*/ | ||
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| - | cursor: pointer; | ||
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| - | |||
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| - | margin-top: 5px; | ||
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| - | border-right: 8px solid transparent; | ||
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| - | |||
| - | .inactive .sort-icon { | ||
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| - | border-top: 8px solid #E6E6E6; | ||
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| - | |||
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| - | /*finish triangle*/ | ||
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| - | /*finish triangle*/ | ||
| - | border-top: 8px solid #999; | ||
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| - | </style></head> | ||
| - | <body> | ||
| - | <script>/* This Source Code Form is subject to the terms of the Mozilla Public | ||
| - | * License, v. 2.0. If a copy of the MPL was not distributed with this file, | ||
| - | * You can obtain one at http://mozilla.org/MPL/2.0/. */ | ||
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| - | window.open(find('img', elem).getAttribute('src')); | ||
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| - | var reversed = !clicked.classList.contains('asc'); | ||
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| - | |||
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| - | |||
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| - | |||
| - | function key_result(col_index) { | ||
| - | return function(elem) { | ||
| - | var strings = ['Error', 'Failed', 'XFailed', 'XPassed', 'Skipped', | ||
| - | 'Passed']; | ||
| - | return strings.indexOf(elem.childNodes[col_index].firstChild.data); | ||
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| - | |||
| - | function reset_sort_headers() { | ||
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| - | var icon = document.createElement("div"); | ||
| - | icon.className = "sort-icon"; | ||
| - | icon.textContent = "vvv"; | ||
| - | elem.insertBefore(icon, elem.firstChild); | ||
| - | elem.classList.remove("desc", "active"); | ||
| - | elem.classList.add("asc", "inactive"); | ||
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| - | } | ||
| - | |||
| - | function toggle_sort_states(elem) { | ||
| - | //if active, toggle between asc and desc | ||
| - | if (elem.classList.contains('active')) { | ||
| - | elem.classList.toggle('asc'); | ||
| - | elem.classList.toggle('desc'); | ||
| - | } | ||
| - | |||
| - | //if inactive, reset all other functions and add ascending active | ||
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| - | |||
| - | function split_extra_onto_two_rows() { | ||
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| - | elem.parentNode.insertBefore(new_row, elem.nextSibling); | ||
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| - | td_elem.colSpan=5; | ||
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| - | td_elem.parentNode.removeChild(td_elem); | ||
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| - | |||
| - | function one_row_for_data() { | ||
| - | find_all('tr.results-table-row').forEach(function(elem) { | ||
| - | if (elem.nextSibling.classList.contains('extra')) { | ||
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| - | function (td_elem) { | ||
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| - | </script> | ||
| - | <p>Report generated on 06-Aug-2016 at 11:16:34</p> | ||
| - | <h2>Environment</h2> | ||
| - | <table id="environment"> | ||
| - | <tr> | ||
| - | <td>Platform</td> | ||
| - | <td>Linux-3.13.0-042stab111.12-x86_64-with-debian-jessie-sid</td></tr> | ||
| - | <tr> | ||
| - | <td>Python</td> | ||
| - | <td>2.7.11</td></tr></table> | ||
| - | <h2>Summary</h2> | ||
| - | <p>0 tests ran in 10.45 seconds.<br/><span class="passed">0 passed</span>, <span class="skipped">14 skipped</span>, <span class="failed">0 failed</span>, <span class="error">4 errors</span>.<br/><span class="skipped">0 expected failures</span>, <span class="failed">0 unexpected passes</span>.</p> | ||
| - | <h2>Results</h2> | ||
| - | <table id="results-table"> | ||
| - | <thead id="results-table-head"> | ||
| - | <tr> | ||
| - | <th class="sortable initial-sort result" col="result">Result</th> | ||
| - | <th class="sortable" col="name">Test</th> | ||
| - | <th class="sortable numeric" col="duration">Duration</th> | ||
| - | <th>Links</th></tr></thead> | ||
| - | <tbody id="results-table-body"> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_j_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 74, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_j_blue_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 80, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_last_line_interactions[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 90, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_nubar_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 108, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_ws[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 114, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_luminosity_inner[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 120, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="error results-table-row"> | ||
| - | <td class="col-result">Error</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.07</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'><br/>request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]'>><br/>reference = <class 'pandas.io.pytables.HDFStore'><br/>File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000]) <br/>data_path = {'config_dirpath': '/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at', 'gen_ref_dirpath'...i96/slow-tests/bigref/3e55c13', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/at.h5', 'setup_name': 'at'}<br/>atomic_data_fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> @pytest.fixture(scope="class", autouse=True)<br/> def setup(self, request, reference, data_path, atomic_data_fname):<br/> """<br/> This method does initial setup of creating configuration and performing<br/> a single run of integration test.<br/> """<br/> # The last component in dirpath can be extracted as name of setup.<br/> self.name = data_path['setup_name']<br/> <br/> self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")<br/> <br/> # Load atom data file separately, pass it for forming tardis config.<br/>> self.atom_data = AtomData.from_hdf5(atomic_data_fname)<br/><br/>tardis/tests/integration_tests/test_integration.py:33: <br/>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ <br/><br/>cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> def from_hdf5(cls, fname=None):<br/> """<br/> Function to read all the atom data from a special TARDIS HDF5 File.<br/> <br/> Parameters<br/> ----------<br/> <br/> fname: str, optional<br/> the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS<br/> For more complex atomic data please contact the authors.<br/> <br/> use_macro_atom:<br/> default `False`. Set to `True`, if you want to read in macro_atom_data<br/> """<br/> <br/> if fname is None:<br/> fname = default_atom_h5_path<br/> <br/> if not os.path.exists(fname):<br/>> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)<br/><span class="error">E ValueError: Supplied Atomic Model Database /home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5 does not exists</span><br/><br/>tardis/atomic.py:307: ValueError<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_montecarlo_properties[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 162, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="error results-table-row"> | ||
| - | <td class="col-result">Error</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_shell_temperature[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'><br/>request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]'>><br/>reference = <class 'pandas.io.pytables.HDFStore'><br/>File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000]) <br/>data_path = {'config_dirpath': '/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at', 'gen_ref_dirpath'...i96/slow-tests/bigref/3e55c13', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/at.h5', 'setup_name': 'at'}<br/>atomic_data_fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> @pytest.fixture(scope="class", autouse=True)<br/> def setup(self, request, reference, data_path, atomic_data_fname):<br/> """<br/> This method does initial setup of creating configuration and performing<br/> a single run of integration test.<br/> """<br/> # The last component in dirpath can be extracted as name of setup.<br/> self.name = data_path['setup_name']<br/> <br/> self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")<br/> <br/> # Load atom data file separately, pass it for forming tardis config.<br/>> self.atom_data = AtomData.from_hdf5(atomic_data_fname)<br/><br/>tardis/tests/integration_tests/test_integration.py:33: <br/>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ <br/><br/>cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> def from_hdf5(cls, fname=None):<br/> """<br/> Function to read all the atom data from a special TARDIS HDF5 File.<br/> <br/> Parameters<br/> ----------<br/> <br/> fname: str, optional<br/> the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS<br/> For more complex atomic data please contact the authors.<br/> <br/> use_macro_atom:<br/> default `False`. Set to `True`, if you want to read in macro_atom_data<br/> """<br/> <br/> if fname is None:<br/> fname = default_atom_h5_path<br/> <br/> if not os.path.exists(fname):<br/>> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)<br/><span class="error">E ValueError: Supplied Atomic Model Database /home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5 does not exists</span><br/><br/>tardis/atomic.py:307: ValueError<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_j_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 74, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_j_blue_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 80, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_last_line_interactions[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 90, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_nubar_estimators[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 108, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_ws[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 114, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_luminosity_inner[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 120, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="error results-table-row"> | ||
| - | <td class="col-result">Error</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.05</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'><br/>request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]'>><br/>reference = <class 'pandas.io.pytables.HDFStore'><br/>File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000]) <br/>data_path = {'config_dirpath': '/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7', 'gen_ref_dirpath'...i96/slow-tests/bigref/3e55c13', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/w7.h5', 'setup_name': 'w7'}<br/>atomic_data_fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> @pytest.fixture(scope="class", autouse=True)<br/> def setup(self, request, reference, data_path, atomic_data_fname):<br/> """<br/> This method does initial setup of creating configuration and performing<br/> a single run of integration test.<br/> """<br/> # The last component in dirpath can be extracted as name of setup.<br/> self.name = data_path['setup_name']<br/> <br/> self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")<br/> <br/> # Load atom data file separately, pass it for forming tardis config.<br/>> self.atom_data = AtomData.from_hdf5(atomic_data_fname)<br/><br/>tardis/tests/integration_tests/test_integration.py:33: <br/>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ <br/><br/>cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> def from_hdf5(cls, fname=None):<br/> """<br/> Function to read all the atom data from a special TARDIS HDF5 File.<br/> <br/> Parameters<br/> ----------<br/> <br/> fname: str, optional<br/> the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS<br/> For more complex atomic data please contact the authors.<br/> <br/> use_macro_atom:<br/> default `False`. Set to `True`, if you want to read in macro_atom_data<br/> """<br/> <br/> if fname is None:<br/> fname = default_atom_h5_path<br/> <br/> if not os.path.exists(fname):<br/>> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)<br/><span class="error">E ValueError: Supplied Atomic Model Database /home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5 does not exists</span><br/><br/>tardis/atomic.py:307: ValueError<br/></div></td></tr> | ||
| - | <tr class="skipped results-table-row"> | ||
| - | <td class="col-result">Skipped</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_montecarlo_properties[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">('lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py', 162, u'Skipped: Introduction of HDF mechanism.')<br/></div></td></tr> | ||
| - | <tr class="error results-table-row"> | ||
| - | <td class="col-result">Error</td> | ||
| - | <td class="col-name">lib.linux-x86_64-2.7/tardis/tests/integration_tests/test_integration.py::TestIntegration::()::test_shell_temperature[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]::setup</td> | ||
| - | <td class="col-duration">0.00</td> | ||
| - | <td class="col-links"></td> | ||
| - | <td class="extra"> | ||
| - | <div class="log" style="clear: both">self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'><br/>request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]'>><br/>reference = <class 'pandas.io.pytables.HDFStore'><br/>File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000]) <br/>data_path = {'config_dirpath': '/tmp/tardis-test-M32BRr/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7', 'gen_ref_dirpath'...i96/slow-tests/bigref/3e55c13', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/w7.h5', 'setup_name': 'w7'}<br/>atomic_data_fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> @pytest.fixture(scope="class", autouse=True)<br/> def setup(self, request, reference, data_path, atomic_data_fname):<br/> """<br/> This method does initial setup of creating configuration and performing<br/> a single run of integration test.<br/> """<br/> # The last component in dirpath can be extracted as name of setup.<br/> self.name = data_path['setup_name']<br/> <br/> self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")<br/> <br/> # Load atom data file separately, pass it for forming tardis config.<br/>> self.atom_data = AtomData.from_hdf5(atomic_data_fname)<br/><br/>tardis/tests/integration_tests/test_integration.py:33: <br/>_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ <br/><br/>cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5'<br/><br/> @classmethod<br/> def from_hdf5(cls, fname=None):<br/> """<br/> Function to read all the atom data from a special TARDIS HDF5 File.<br/> <br/> Parameters<br/> ----------<br/> <br/> fname: str, optional<br/> the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS<br/> For more complex atomic data please contact the authors.<br/> <br/> use_macro_atom:<br/> default `False`. Set to `True`, if you want to read in macro_atom_data<br/> """<br/> <br/> if fname is None:<br/> fname = default_atom_h5_path<br/> <br/> if not os.path.exists(fname):<br/>> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)<br/><span class="error">E ValueError: Supplied Atomic Model Database /home/karandesai96/slow-tests/kurucz_cd23_chianti_H_He.h5 does not exists</span><br/><br/>tardis/atomic.py:307: ValueError<br/></div></td></tr></tbody></table></body></html> | ||
reports/3e55c13.1470482195.txt.gz ยท Last modified: 2016/08/06 13:16 by karandesai96
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