Integration Tests Report

self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'>
request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]'>>
reference = <class 'pandas.io.pytables.HDFStore'>
File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000])
data_path = {'config_dirpath': '/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at', 'gen_ref_dirpath'...i96/slow-tests/bigref/bea4d64', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/at.h5', 'setup_name': 'at'}
atomic_data_fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
@pytest.fixture(scope="class", autouse=True)
def setup(self, request, reference, data_path, atomic_data_fname):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']

self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")

# Load atom data file separately, pass it for forming tardis config.
> self.atom_data = AtomData.from_hdf5(atomic_data_fname)

tardis/tests/integration_tests/test_integration.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
def from_hdf5(cls, fname=None):
"""
Function to read all the atom data from a special TARDIS HDF5 File.

Parameters
----------

fname: str, optional
the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS
For more complex atomic data please contact the authors.

use_macro_atom:
default `False`. Set to `True`, if you want to read in macro_atom_data
"""

if fname is None:
fname = default_atom_h5_path

if not os.path.exists(fname):
> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)
E ValueError: Supplied Atomic Model Database /home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5 does not exists

tardis/atomic.py:307: ValueError

self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'>
request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at]'>>
reference = <class 'pandas.io.pytables.HDFStore'>
File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000])
data_path = {'config_dirpath': '/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/at', 'gen_ref_dirpath'...i96/slow-tests/bigref/bea4d64', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/at.h5', 'setup_name': 'at'}
atomic_data_fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
@pytest.fixture(scope="class", autouse=True)
def setup(self, request, reference, data_path, atomic_data_fname):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']

self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")

# Load atom data file separately, pass it for forming tardis config.
> self.atom_data = AtomData.from_hdf5(atomic_data_fname)

tardis/tests/integration_tests/test_integration.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
def from_hdf5(cls, fname=None):
"""
Function to read all the atom data from a special TARDIS HDF5 File.

Parameters
----------

fname: str, optional
the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS
For more complex atomic data please contact the authors.

use_macro_atom:
default `False`. Set to `True`, if you want to read in macro_atom_data
"""

if fname is None:
fname = default_atom_h5_path

if not os.path.exists(fname):
> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)
E ValueError: Supplied Atomic Model Database /home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5 does not exists

tardis/atomic.py:307: ValueError

self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'>
request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]'>>
reference = <class 'pandas.io.pytables.HDFStore'>
File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000])
data_path = {'config_dirpath': '/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7', 'gen_ref_dirpath'...i96/slow-tests/bigref/bea4d64', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/w7.h5', 'setup_name': 'w7'}
atomic_data_fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
@pytest.fixture(scope="class", autouse=True)
def setup(self, request, reference, data_path, atomic_data_fname):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']

self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")

# Load atom data file separately, pass it for forming tardis config.
> self.atom_data = AtomData.from_hdf5(atomic_data_fname)

tardis/tests/integration_tests/test_integration.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
def from_hdf5(cls, fname=None):
"""
Function to read all the atom data from a special TARDIS HDF5 File.

Parameters
----------

fname: str, optional
the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS
For more complex atomic data please contact the authors.

use_macro_atom:
default `False`. Set to `True`, if you want to read in macro_atom_data
"""

if fname is None:
fname = default_atom_h5_path

if not os.path.exists(fname):
> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)
E ValueError: Supplied Atomic Model Database /home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5 does not exists

tardis/atomic.py:307: ValueError

self = <class 'tardis.tests.integration_tests.test_integration.TestIntegration'>
request = <SubRequest 'setup' for <Function 'test_spectrum[/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7]'>>
reference = <class 'pandas.io.pytables.HDFStore'>
File path: /home/karandesai96/slow-tests...rtual/wavelength series (shape->[10000])
data_path = {'config_dirpath': '/tmp/tardis-test-SppF1m/lib.linux-x86_64-2.7/tardis/tests/integration_tests/w7', 'gen_ref_dirpath'...i96/slow-tests/bigref/bea4d64', 'reference_filepath': '/home/karandesai96/slow-tests/bigref/w7.h5', 'setup_name': 'w7'}
atomic_data_fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
@pytest.fixture(scope="class", autouse=True)
def setup(self, request, reference, data_path, atomic_data_fname):
"""
This method does initial setup of creating configuration and performing
a single run of integration test.
"""
# The last component in dirpath can be extracted as name of setup.
self.name = data_path['setup_name']

self.config_file = os.path.join(data_path['config_dirpath'], "config.yml")

# Load atom data file separately, pass it for forming tardis config.
> self.atom_data = AtomData.from_hdf5(atomic_data_fname)

tardis/tests/integration_tests/test_integration.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

cls = <class 'tardis.atomic.AtomData'>, fname = '/home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5'

@classmethod
def from_hdf5(cls, fname=None):
"""
Function to read all the atom data from a special TARDIS HDF5 File.

Parameters
----------

fname: str, optional
the default for this is `None` and then it will use the very limited atomic_data shipped with TARDIS
For more complex atomic data please contact the authors.

use_macro_atom:
default `False`. Set to `True`, if you want to read in macro_atom_data
"""

if fname is None:
fname = default_atom_h5_path

if not os.path.exists(fname):
> raise ValueError("Supplied Atomic Model Database %s does not exists" % fname)
E ValueError: Supplied Atomic Model Database /home/karandesai96/atom_data/kurucz_cd23_chianti_H_He.h5 does not exists

tardis/atomic.py:307: ValueError